J4_6SGC_001

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AUAG*CA(PSU)*AGG(7MG)(H2U)(5MC)(5MC)*GU

Length

16 nucleotides

Bulged bases

6SGC|1|23|U|8, 6SGC|1|23|H2U|47, 6SGC|1|23|5MC|48

QA status

Modified nucleotides: PSU, 7MG, H2U, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SGC_001 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2224

The information below is about J4_8VU0_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

6SGC|1|23|A|7
6SGC|1|23|U|8
6SGC|1|23|A|9
6SGC|1|23|G|10
*
6SGC|1|23|C|25
6SGC|1|23|A|26
6SGC|1|23|PSU|27
*
6SGC|1|23|A|43
6SGC|1|23|G|44
6SGC|1|23|G|45
6SGC|1|23|7MG|46
6SGC|1|23|H2U|47
6SGC|1|23|5MC|48
6SGC|1|23|5MC|49
*
6SGC|1|23|G|65
6SGC|1|23|U|66

Current chains

Chain 23

tRNA (Lys3)

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain I2

60S ribosomal protein L10

Chain Q1

uS19