J4_6SGC_005
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CC*GAGGGAG*UGCGCCGCGCUCU*GAGCGCACGGGG
- Length
- 34 nucleotides
- Bulged bases
- 6SGC|1|54|G|959, 6SGC|1|54|C|972, 6SGC|1|54|C|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|C|712
6SGC|1|54|C|713
*
6SGC|1|54|G|955
6SGC|1|54|A|956
6SGC|1|54|G|957
6SGC|1|54|G|958
6SGC|1|54|G|959
6SGC|1|54|A|960
6SGC|1|54|G|961
*
6SGC|1|54|U|971
6SGC|1|54|G|971|||A
6SGC|1|54|C|972
6SGC|1|54|G|973
6SGC|1|54|C|974
6SGC|1|54|C|975
6SGC|1|54|G|976
6SGC|1|54|C|977
6SGC|1|54|G|978
6SGC|1|54|C|979
6SGC|1|54|U|980
6SGC|1|54|C|981
6SGC|1|54|U|982
*
6SGC|1|54|G|1273
6SGC|1|54|A|1274
6SGC|1|54|G|1275
6SGC|1|54|C|1276
6SGC|1|54|G|1277
6SGC|1|54|C|1278
6SGC|1|54|A|1279
6SGC|1|54|C|1280
6SGC|1|54|G|1281
6SGC|1|54|G|1282
6SGC|1|54|G|1283
6SGC|1|54|G|1284
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain C2
- uL4
- Chain E2
- 60S ribosomal protein L6
- Chain F2
- uL30
- Chain b2
- eL29
- Chain e2
- eL32
Coloring options: