J4_6SGC_008

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*UGUGAA*UGGAAAG*UC

Length

17 nucleotides

Bulged bases

6SGC|1|54|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|G|2618
6SGC|1|54|G|2619
*
6SGC|1|54|U|2637
6SGC|1|54|G|2638
6SGC|1|54|U|2639
6SGC|1|54|G|2640
6SGC|1|54|A|2641
6SGC|1|54|A|2642
*
6SGC|1|54|U|2692
6SGC|1|54|G|2693
6SGC|1|54|G|2694
6SGC|1|54|A|2695
6SGC|1|54|A|2696
6SGC|1|54|A|2697
6SGC|1|54|G|2698
*
6SGC|1|54|U|2718
6SGC|1|54|C|2719

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain R2

eL19

Chain U2

eL22

Chain g2

eL34

Chain k2

eL38