J4_6SGC_010
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6SGC|1|54|U|3818
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SGC_010 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.0972
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SGC|1|54|C|3696
6SGC|1|54|U|3697
6SGC|1|54|G|3698
*
6SGC|1|54|C|3752
6SGC|1|54|G|3753
*
6SGC|1|54|C|3771
6SGC|1|54|U|3772
6SGC|1|54|U|3773
6SGC|1|54|A|3774
6SGC|1|54|A|3775
6SGC|1|54|G|3776
6SGC|1|54|G|3777
6SGC|1|54|U|3778
6SGC|1|54|A|3779
6SGC|1|54|G|3780
*
6SGC|1|54|U|3814
6SGC|1|54|G|3815
6SGC|1|54|A|3816
6SGC|1|54|A|3817
6SGC|1|54|U|3818
6SGC|1|54|G|3819
Current chains
- Chain 54
- 28S ribosomal RNA
Nearby chains
- Chain 23
- Transfer RNA; tRNA
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain A2
- Ribosomal protein L8
- Chain n2
- 60s ribosomal protein l41
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