J4_6SGC_012

3D structure

PDB id

6SGC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome stalled on a poly(A) tail

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6SGC|1|54|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SGC_012 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1752

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SGC|1|54|C|4231
6SGC|1|54|U|4232
6SGC|1|54|A|4233
6SGC|1|54|A|4234
6SGC|1|54|G|4235
*
6SGC|1|54|U|4289
6SGC|1|54|U|4290
6SGC|1|54|G|4291
6SGC|1|54|A|4292
6SGC|1|54|U|4293
*
6SGC|1|54|A|4317
6SGC|1|54|C|4318
6SGC|1|54|C|4319
*
6SGC|1|54|G|4328
6SGC|1|54|G|4329
6SGC|1|54|G|4330

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D2

60S ribosomal protein L5

Chain T2

eL21

Chain b2

eL29

Chain o2

eL42