J4_6SGC_014
3D structure
- PDB id
- 6SGC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome stalled on a poly(A) tail
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUGAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6SGC|1|A1|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SGC_014 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.1713
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SGC|1|A1|C|98
6SGC|1|A1|A|99
6SGC|1|A1|U|100
6SGC|1|A1|U|101
6SGC|1|A1|A|102
6SGC|1|A1|A|103
6SGC|1|A1|A|104
6SGC|1|A1|U|105
6SGC|1|A1|C|106
*
6SGC|1|A1|G|355
6SGC|1|A1|C|356
6SGC|1|A1|C|357
*
6SGC|1|A1|G|405
6SGC|1|A1|U|406
6SGC|1|A1|G|407
6SGC|1|A1|A|408
6SGC|1|A1|C|409
*
6SGC|1|A1|G|431
6SGC|1|A1|G|432
Current chains
- Chain A1
- 18S ribosomal RNA
Nearby chains
- Chain F1
- 40S ribosomal protein S4
- Chain J1
- 40S ribosomal protein S8
- Chain M1
- Ribosomal protein S11
- Chain Y1
- uS12
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