J4_6SJ6_002

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAAAG*CC*GAGC*GG

Length

14 nucleotides

Bulged bases

6SJ6|1|A|G|1309, 6SJ6|1|A|A|1310, 6SJ6|1|A|A|1312, 6SJ6|1|A|G|1691

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SJ6_002 not in the Motif Atlas

Homologous match to J4_4WF9_004

Geometric discrepancy: 0.152

The information below is about J4_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6SJ6|1|A|C|1308
6SJ6|1|A|G|1309
6SJ6|1|A|A|1310
6SJ6|1|A|A|1311
6SJ6|1|A|A|1312
6SJ6|1|A|G|1313
*
6SJ6|1|A|C|1331
6SJ6|1|A|C|1332
*
6SJ6|1|A|G|1689
6SJ6|1|A|A|1690
6SJ6|1|A|G|1691
6SJ6|1|A|C|1692
*
6SJ6|1|A|G|2036
6SJ6|1|A|G|2037

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22