J4_6SJ6_005

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

ACUCGGCAAAAUGAC*GUG*CCGCAGUGAAUAGG*CACUGU

Length

38 nucleotides

Bulged bases

6SJ6|1|A|G|1785, 6SJ6|1|A|G|1790, 6SJ6|1|A|G|2019

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|A|1713
6SJ6|1|A|C|1714
6SJ6|1|A|U|1715
6SJ6|1|A|C|1716
6SJ6|1|A|G|1717
6SJ6|1|A|G|1718
6SJ6|1|A|C|1719
6SJ6|1|A|A|1720
6SJ6|1|A|A|1721
6SJ6|1|A|A|1722
6SJ6|1|A|A|1723
6SJ6|1|A|U|1724
6SJ6|1|A|G|1725
6SJ6|1|A|A|1726
6SJ6|1|A|C|1727
*
6SJ6|1|A|G|1749
6SJ6|1|A|U|1750
6SJ6|1|A|G|1751
*
6SJ6|1|A|C|1778
6SJ6|1|A|C|1779
6SJ6|1|A|G|1780
6SJ6|1|A|C|1781
6SJ6|1|A|A|1782
6SJ6|1|A|G|1783
6SJ6|1|A|U|1784
6SJ6|1|A|G|1785
6SJ6|1|A|A|1786
6SJ6|1|A|A|1787
6SJ6|1|A|U|1788
6SJ6|1|A|A|1789
6SJ6|1|A|G|1790
6SJ6|1|A|G|1791
*
6SJ6|1|A|C|2015
6SJ6|1|A|A|2016
6SJ6|1|A|C|2017
6SJ6|1|A|U|2018
6SJ6|1|A|G|2019
6SJ6|1|A|U|2020

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain N

50S ribosomal protein L14

Chain S

50S ribosomal protein L19