J4_6SJ6_007

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCAUAGAG*CAUAAGGGAGCUUGAC*GGG*CGG

Length

61 nucleotides

Bulged bases

6SJ6|1|A|A|2315, 6SJ6|1|A|C|2324, 6SJ6|1|A|U|2332, 6SJ6|1|A|G|2334, 6SJ6|1|A|A|2336, 6SJ6|1|A|A|2337, 6SJ6|1|A|U|2361, 6SJ6|1|A|A|2363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|C|2312
6SJ6|1|A|A|2313
6SJ6|1|A|A|2314
6SJ6|1|A|A|2315
6SJ6|1|A|G|2316
6SJ6|1|A|G|2317
6SJ6|1|A|U|2318
6SJ6|1|A|U|2319
6SJ6|1|A|C|2320
6SJ6|1|A|C|2321
6SJ6|1|A|C|2322
6SJ6|1|A|U|2323
6SJ6|1|A|C|2324
6SJ6|1|A|A|2325
6SJ6|1|A|G|2326
6SJ6|1|A|A|2327
6SJ6|1|A|A|2328
6SJ6|1|A|U|2329
6SJ6|1|A|G|2330
6SJ6|1|A|G|2331
6SJ6|1|A|U|2332
6SJ6|1|A|U|2333
6SJ6|1|A|G|2334
6SJ6|1|A|G|2335
6SJ6|1|A|A|2336
6SJ6|1|A|A|2337
6SJ6|1|A|A|2338
6SJ6|1|A|U|2339
6SJ6|1|A|C|2340
6SJ6|1|A|A|2341
6SJ6|1|A|U|2342
6SJ6|1|A|U|2343
6SJ6|1|A|C|2344
6SJ6|1|A|A|2345
6SJ6|1|A|U|2346
6SJ6|1|A|A|2347
6SJ6|1|A|G|2348
6SJ6|1|A|A|2349
6SJ6|1|A|G|2350
*
6SJ6|1|A|C|2359
6SJ6|1|A|A|2360
6SJ6|1|A|U|2361
6SJ6|1|A|A|2362
6SJ6|1|A|A|2363
6SJ6|1|A|G|2364
6SJ6|1|A|G|2365
6SJ6|1|A|G|2366
6SJ6|1|A|A|2367
6SJ6|1|A|G|2368
6SJ6|1|A|C|2369
6SJ6|1|A|U|2370
6SJ6|1|A|U|2371
6SJ6|1|A|G|2372
6SJ6|1|A|A|2373
6SJ6|1|A|C|2374
*
6SJ6|1|A|G|2397
6SJ6|1|A|G|2398
6SJ6|1|A|G|2399
*
6SJ6|1|A|C|2408
6SJ6|1|A|G|2409
6SJ6|1|A|G|2410

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain B

5S ribosomal RNA; 5S rRNA

Chain R

50S ribosomal protein L18

Chain Z

50S ribosomal protein L27