J4_6SJ6_009

3D structure

PDB id

6SJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GAUGCAAGGUUAAG*UGGAGCCGUAG*CGAG*CGUUUAGUAU

Length

39 nucleotides

Bulged bases

6SJ6|1|A|U|698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SJ6|1|A|G|640
6SJ6|1|A|A|641
6SJ6|1|A|U|642
6SJ6|1|A|G|643
6SJ6|1|A|C|644
6SJ6|1|A|A|645
6SJ6|1|A|A|646
6SJ6|1|A|G|647
6SJ6|1|A|G|648
6SJ6|1|A|U|649
6SJ6|1|A|U|650
6SJ6|1|A|A|651
6SJ6|1|A|A|652
6SJ6|1|A|G|653
*
6SJ6|1|A|U|663
6SJ6|1|A|G|664
6SJ6|1|A|G|665
6SJ6|1|A|A|666
6SJ6|1|A|G|667
6SJ6|1|A|C|668
6SJ6|1|A|C|669
6SJ6|1|A|G|670
6SJ6|1|A|U|671
6SJ6|1|A|A|672
6SJ6|1|A|G|673
*
6SJ6|1|A|C|680
6SJ6|1|A|G|681
6SJ6|1|A|A|682
6SJ6|1|A|G|683
*
6SJ6|1|A|C|695
6SJ6|1|A|G|696
6SJ6|1|A|U|697
6SJ6|1|A|U|698
6SJ6|1|A|U|699
6SJ6|1|A|A|700
6SJ6|1|A|G|701
6SJ6|1|A|U|702
6SJ6|1|A|A|703
6SJ6|1|A|U|704

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain F

50S ribosomal protein L4

Chain O

50S ribosomal protein L15