J4_6SKF_002

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAG*CAUAG*(OMC)GAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|Aa|G|122
6SKF|1|Aa|A|123
6SKF|1|Aa|G|124
*
6SKF|1|Aa|C|158
6SKF|1|Aa|A|159
6SKF|1|Aa|U|160
6SKF|1|Aa|A|161
6SKF|1|Aa|G|162
*
6SKF|1|Aa|OMC|190
6SKF|1|Aa|G|191
6SKF|1|Aa|A|192
6SKF|1|Aa|A|193
6SKF|1|Aa|A|194
6SKF|1|Aa|G|195
6SKF|1|Aa|G|196
*
6SKF|1|Aa|C|207
6SKF|1|Aa|G|208
6SKF|1|Aa|C|209

Current chains

Chain Aa

16S rRNA

Nearby chains

Chain Af

30S ribosomal protein S4e

Chain Ak

30S ribosomal protein S8e