J4_6SKF_003
3D structure
- PDB id
- 6SKF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- CCUAAAGCG*CGAAG*UGUAAAGGAUG*CCG
- Length
- 28 nucleotides
- Bulged bases
- 6SKF|1|Aa|A|517, 6SKF|1|Aa|C|521, 6SKF|1|Aa|A|761
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SKF|1|Aa|C|514
6SKF|1|Aa|C|515
6SKF|1|Aa|U|516
6SKF|1|Aa|A|517
6SKF|1|Aa|A|518
6SKF|1|Aa|A|519
6SKF|1|Aa|G|520
6SKF|1|Aa|C|521
6SKF|1|Aa|G|522
*
6SKF|1|Aa|C|710
6SKF|1|Aa|G|711
6SKF|1|Aa|A|712
6SKF|1|Aa|A|713
6SKF|1|Aa|G|714
*
6SKF|1|Aa|U|757
6SKF|1|Aa|G|758
6SKF|1|Aa|U|759
6SKF|1|Aa|A|760
6SKF|1|Aa|A|761
6SKF|1|Aa|A|762
6SKF|1|Aa|G|763
6SKF|1|Aa|G|764
6SKF|1|Aa|A|765
6SKF|1|Aa|U|766
6SKF|1|Aa|G|767
*
6SKF|1|Aa|C|829
6SKF|1|Aa|C|830
6SKF|1|Aa|G|831
Current chains
- Chain Aa
- 16S rRNA
Nearby chains
- Chain Aj
- 30S ribosomal protein S8
- Chain An
- 30S ribosomal protein S11
- Chain Ao
- 30S ribosomal protein S12
- Chain Aq
- 30S ribosomal protein S15
- Chain As
- 30S ribosomal protein S17
- Chain Bk
- LSU ribosomal protein L41E
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