J4_6SKF_009

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

AC*GC*GG*UU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SKF_009 not in the Motif Atlas

Homologous match to J4_4V9F_006

Geometric discrepancy: 0.4265

The information below is about J4_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_75575.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SKF|1|BA|A|1598
6SKF|1|BA|C|1599
*
6SKF|1|BA|G|1615
6SKF|1|BA|C|1616
*
6SKF|1|BA|G|1673
6SKF|1|BA|G|1674
*
6SKF|1|BA|U|1691
6SKF|1|BA|U|1692

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L19e

Chain Be

50S ribosomal protein L34e