J4_6SKF_010

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GACUG*CACAG*(4AC)GAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4AC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|G|1900
6SKF|1|BA|A|1901
6SKF|1|BA|C|1902
6SKF|1|BA|U|1903
6SKF|1|BA|G|1904
*
6SKF|1|BA|C|1916
6SKF|1|BA|A|1917
6SKF|1|BA|C|1918
6SKF|1|BA|A|1919
6SKF|1|BA|G|1920
*
6SKF|1|BA|4AC|1955
6SKF|1|BA|G|1956
6SKF|1|BA|A|1957
6SKF|1|BA|C|1958
*
6SKF|1|BA|G|2088
6SKF|1|BA|U|2089
6SKF|1|BA|A|2090
6SKF|1|BA|A|2091
6SKF|1|BA|C|2092

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2

Chain Bg

50S ribosomal protein L37Ae

Chain Bk

LSU ribosomal protein L41E