J4_6SKF_011

3D structure

PDB id

6SKF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of T. kodakarensis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

CUG*(OMC)(OMG)*CUUAAGGUAG(OMC)*GCAUGAAUG

Length

25 nucleotides

Bulged bases

6SKF|1|BA|U|2084

QA status

Modified nucleotides: OMC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SKF|1|BA|C|1961
6SKF|1|BA|U|1962
6SKF|1|BA|G|1963
*
6SKF|1|BA|OMC|2018
6SKF|1|BA|OMG|2019
*
6SKF|1|BA|C|2037
6SKF|1|BA|U|2038
6SKF|1|BA|U|2039
6SKF|1|BA|A|2040
6SKF|1|BA|A|2041
6SKF|1|BA|G|2042
6SKF|1|BA|G|2043
6SKF|1|BA|U|2044
6SKF|1|BA|A|2045
6SKF|1|BA|G|2046
6SKF|1|BA|OMC|2047
*
6SKF|1|BA|G|2077
6SKF|1|BA|C|2078
6SKF|1|BA|A|2079
6SKF|1|BA|U|2080
6SKF|1|BA|G|2081
6SKF|1|BA|A|2082
6SKF|1|BA|A|2083
6SKF|1|BA|U|2084
6SKF|1|BA|G|2085

Current chains

Chain BA

23S rRNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2

Chain Bk

LSU ribosomal protein L41E