J4_6SKG_008
3D structure
- PDB id
- 6SKG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of T. kodakarensis 70S ribosome in TkNat10 deleted strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- UC*GGUUAG*CC*GACCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6SKG|1|BA|U|1477
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SKG_008 not in the Motif Atlas
- Homologous match to J4_4V9F_005
- Geometric discrepancy: 0.1117
- The information below is about J4_4V9F_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_48150.1
- Basepair signature
- cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 8
Unit IDs
6SKG|1|BA|U|1449
6SKG|1|BA|C|1450
*
6SKG|1|BA|G|1474
6SKG|1|BA|G|1475
6SKG|1|BA|U|1476
6SKG|1|BA|U|1477
6SKG|1|BA|A|1478
6SKG|1|BA|G|1479
*
6SKG|1|BA|C|1542
6SKG|1|BA|C|1543
*
6SKG|1|BA|G|1742
6SKG|1|BA|A|1743
6SKG|1|BA|C|1744
6SKG|1|BA|C|1745
6SKG|1|BA|G|1746
6SKG|1|BA|U|1747
6SKG|1|BA|A|1748
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BS
- 50S ribosomal protein L19e
- Chain BW
- 50S ribosomal protein L23
- Chain BZ
- 50S ribosomal protein L29
- Chain Be
- 50S ribosomal protein L34e
- Chain Bi
- 50S ribosomal protein L39e
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