J4_6SPB_004
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- CGACAAU*AC*GCUU*AG
- Length
- 15 nucleotides
- Bulged bases
- 6SPB|1|A|G|1258, 6SPB|1|A|A|1259, 6SPB|1|A|C|1260, 6SPB|1|A|A|1262, 6SPB|1|A|U|1637
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPB_004 not in the Motif Atlas
- Homologous match to J4_5J7L_021
- Geometric discrepancy: 0.1797
- The information below is about J4_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_64571.5
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6SPB|1|A|C|1257
6SPB|1|A|G|1258
6SPB|1|A|A|1259
6SPB|1|A|C|1260
6SPB|1|A|A|1261
6SPB|1|A|A|1262
6SPB|1|A|U|1263
*
6SPB|1|A|A|1281
6SPB|1|A|C|1282
*
6SPB|1|A|G|1635
6SPB|1|A|C|1636
6SPB|1|A|U|1637
6SPB|1|A|U|1638
*
6SPB|1|A|A|1996
6SPB|1|A|G|1997
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L32
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
Coloring options: