J4_6SPB_006

3D structure

PDB id

6SPB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UC*GGUUAG*CU*AACCGUA

Length

17 nucleotides

Bulged bases

6SPB|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPB_006 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0889

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SPB|1|A|U|1300
6SPB|1|A|C|1301
*
6SPB|1|A|G|1325
6SPB|1|A|G|1326
6SPB|1|A|U|1327
6SPB|1|A|U|1328
6SPB|1|A|A|1329
6SPB|1|A|G|1330
*
6SPB|1|A|C|1391
6SPB|1|A|U|1392
*
6SPB|1|A|A|1587
6SPB|1|A|A|1588
6SPB|1|A|C|1589
6SPB|1|A|C|1590
6SPB|1|A|G|1591
6SPB|1|A|U|1592
6SPB|1|A|A|1593

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23