J4_6SPB_011
3D structure
- PDB id
- 6SPB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 50s ribosome from a clinical isolate with a mutation in uL6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- GGGC*GAC*GGAAA*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPB_011 not in the Motif Atlas
- Homologous match to J4_5J7L_028
- Geometric discrepancy: 0.0959
- The information below is about J4_5J7L_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPB|1|A|G|2630
6SPB|1|A|G|2631
6SPB|1|A|G|2632
6SPB|1|A|C|2633
*
6SPB|1|A|G|2661
6SPB|1|A|A|2662
6SPB|1|A|C|2663
*
6SPB|1|A|G|2718
6SPB|1|A|G|2719
6SPB|1|A|A|2720
6SPB|1|A|A|2721
6SPB|1|A|A|2722
*
6SPB|1|A|U|2756
6SPB|1|A|G|2757
6SPB|1|A|C|2758
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
- Chain J
- 50S ribosomal protein L13
- Chain K
- 50S ribosomal protein L14
Coloring options: