J4_6SPD_005

3D structure

PDB id

6SPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 50s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.28 Å

Loop

Sequence

AG*UU*AC*GU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPD_005 not in the Motif Atlas

Homologous match to J4_5J7L_024

Geometric discrepancy: 0.139

The information below is about J4_5J7L_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_24280.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6SPD|1|A|A|1431
6SPD|1|A|G|1432
*
6SPD|1|A|U|1453
6SPD|1|A|U|1454
*
6SPD|1|A|A|1512
6SPD|1|A|C|1513
*
6SPD|1|A|G|1536
6SPD|1|A|U|1537

Current chains

Chain A

23S ribosomal RNA

Nearby chains