J4_6SPE_001
3D structure
- PDB id
- 6SPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 30s ribosome from a clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGUAAUG*UC*GUAA*UC
- Length
- 16 nucleotides
- Bulged bases
- 6SPE|1|a|U|115
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPE_001 not in the Motif Atlas
- Homologous match to J4_6CZR_027
- Geometric discrepancy: 0.1909
- The information below is about J4_6CZR_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_35578.2
- Basepair signature
- cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6SPE|1|a|G|109
6SPE|1|a|A|110
6SPE|1|a|G|111
6SPE|1|a|U|112
6SPE|1|a|A|113
6SPE|1|a|A|114
6SPE|1|a|U|115
6SPE|1|a|G|116
*
6SPE|1|a|U|233
6SPE|1|a|C|234
*
6SPE|1|a|G|280
6SPE|1|a|U|281
6SPE|1|a|A|282
6SPE|1|a|A|283
*
6SPE|1|a|U|305
6SPE|1|a|C|306
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain q
- 30S ribosomal protein S17
Coloring options: