J4_6SPF_001

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CCUUAAG*UGAAAUCAAGUAG*UGAACAUGG*CCAAG

Length

34 nucleotides

Bulged bases

6SPF|1|A|U|270, 6SPF|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|C|268
6SPF|1|A|C|269
6SPF|1|A|U|270
6SPF|1|A|U|271
6SPF|1|A|A|272
6SPF|1|A|A|273
6SPF|1|A|G|274
*
6SPF|1|A|U|354
6SPF|1|A|G|355
6SPF|1|A|A|356
6SPF|1|A|A|357
6SPF|1|A|A|358
6SPF|1|A|U|359
6SPF|1|A|C|360
6SPF|1|A|A|361
6SPF|1|A|A|362
6SPF|1|A|G|363
6SPF|1|A|U|364
6SPF|1|A|A|365
6SPF|1|A|G|366
*
6SPF|1|A|U|390
6SPF|1|A|G|391
6SPF|1|A|A|392
6SPF|1|A|A|393
6SPF|1|A|C|394
6SPF|1|A|A|395
6SPF|1|A|U|396
6SPF|1|A|G|397
6SPF|1|A|G|398
*
6SPF|1|A|C|411
6SPF|1|A|C|412
6SPF|1|A|A|413
6SPF|1|A|A|414
6SPF|1|A|G|415

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28