J4_6SPF_004

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGUUC*GGUUAG*CU*AACCGUAC

Length

21 nucleotides

Bulged bases

6SPF|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPF_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0904

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SPF|1|A|G|1297
6SPF|1|A|G|1298
6SPF|1|A|U|1299
6SPF|1|A|U|1300
6SPF|1|A|C|1301
*
6SPF|1|A|G|1325
6SPF|1|A|G|1326
6SPF|1|A|U|1327
6SPF|1|A|U|1328
6SPF|1|A|A|1329
6SPF|1|A|G|1330
*
6SPF|1|A|C|1391
6SPF|1|A|U|1392
*
6SPF|1|A|A|1587
6SPF|1|A|A|1588
6SPF|1|A|C|1589
6SPF|1|A|C|1590
6SPF|1|A|G|1591
6SPF|1|A|U|1592
6SPF|1|A|A|1593
6SPF|1|A|C|1594

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain T

50S ribosomal protein L23