J4_6SPF_008
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CUG*CG*CCUAAGGUAG*CGAAUG
- Length
- 21 nucleotides
- Bulged bases
- 6SPF|1|A|U|1958
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SPF_008 not in the Motif Atlas
- Homologous match to J4_9DFE_008
- Geometric discrepancy: 0.1481
- The information below is about J4_9DFE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_42306.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 5
Unit IDs
6SPF|1|A|C|1820
6SPF|1|A|U|1821
6SPF|1|A|G|1822
*
6SPF|1|A|C|1892
6SPF|1|A|G|1893
*
6SPF|1|A|C|1911
6SPF|1|A|C|1912
6SPF|1|A|U|1913
6SPF|1|A|A|1914
6SPF|1|A|A|1915
6SPF|1|A|G|1916
6SPF|1|A|G|1917
6SPF|1|A|U|1918
6SPF|1|A|A|1919
6SPF|1|A|G|1920
*
6SPF|1|A|C|1954
6SPF|1|A|G|1955
6SPF|1|A|A|1956
6SPF|1|A|A|1957
6SPF|1|A|U|1958
6SPF|1|A|G|1959
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: