J4_6SPF_009
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- CGAAGGUG*CGCUUGACUGCGAG*CGAGCAGGU*AGG
- Length
- 34 nucleotides
- Bulged bases
- 6SPF|1|A|A|2275, 6SPF|1|A|A|2339
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|A|C|2272
6SPF|1|A|G|2273
6SPF|1|A|A|2274
6SPF|1|A|A|2275
6SPF|1|A|G|2276
6SPF|1|A|G|2277
6SPF|1|A|U|2278
6SPF|1|A|G|2279
*
6SPF|1|A|C|2327
6SPF|1|A|G|2328
6SPF|1|A|C|2329
6SPF|1|A|U|2330
6SPF|1|A|U|2331
6SPF|1|A|G|2332
6SPF|1|A|A|2333
6SPF|1|A|C|2334
6SPF|1|A|U|2335
6SPF|1|A|G|2336
6SPF|1|A|C|2337
6SPF|1|A|G|2338
6SPF|1|A|A|2339
6SPF|1|A|G|2340
*
6SPF|1|A|C|2351
6SPF|1|A|G|2352
6SPF|1|A|A|2353
6SPF|1|A|G|2354
6SPF|1|A|C|2355
6SPF|1|A|A|2356
6SPF|1|A|G|2357
6SPF|1|A|G|2358
6SPF|1|A|U|2359
*
6SPF|1|A|A|2368
6SPF|1|A|G|2369
6SPF|1|A|G|2370
Current chains
- Chain A
- Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L33
- Chain 5
- 50S ribosomal protein L35
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain O
- 50S ribosomal protein L18
- Chain W
- 50S ribosomal protein L27
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