J4_6SPF_012

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

UG*CAUACGUC*GAGAAAG*CG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|a|U|137
6SPF|1|a|G|138
*
6SPF|1|a|C|172
6SPF|1|a|A|173
6SPF|1|a|U|174
6SPF|1|a|A|175
6SPF|1|a|C|176
6SPF|1|a|G|177
6SPF|1|a|U|178
6SPF|1|a|C|179
*
6SPF|1|a|G|186
6SPF|1|a|A|187
6SPF|1|a|G|188
6SPF|1|a|A|189
6SPF|1|a|A|190
6SPF|1|a|A|191
6SPF|1|a|G|192
*
6SPF|1|a|C|213
6SPF|1|a|G|214

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20