J4_6SPF_013
3D structure
- PDB id
- 6SPF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GCGC*GCGAAAGCG*CGCCGUAAACGAUG*CC
- Length
- 29 nucleotides
- Bulged bases
- 6SPF|1|a|C|570, 6SPF|1|a|A|809
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SPF|1|a|G|569
6SPF|1|a|C|570
6SPF|1|a|G|571
6SPF|1|a|C|572
*
6SPF|1|a|G|757
6SPF|1|a|C|758
6SPF|1|a|G|759
6SPF|1|a|A|760
6SPF|1|a|A|761
6SPF|1|a|A|762
6SPF|1|a|G|763
6SPF|1|a|C|764
6SPF|1|a|G|765
*
6SPF|1|a|C|802
6SPF|1|a|G|803
6SPF|1|a|C|804
6SPF|1|a|C|805
6SPF|1|a|G|806
6SPF|1|a|U|807
6SPF|1|a|A|808
6SPF|1|a|A|809
6SPF|1|a|A|810
6SPF|1|a|C|811
6SPF|1|a|G|812
6SPF|1|a|A|813
6SPF|1|a|U|814
6SPF|1|a|G|815
*
6SPF|1|a|C|873
6SPF|1|a|C|874
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain h
- 30S ribosomal protein S8
- Chain l
- 30S ribosomal protein S12
- Chain o
- 30S ribosomal protein S15
- Chain q
- 30S ribosomal protein S17
- Chain u
- 30S ribosomal protein S21
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