J4_6SPF_014

3D structure

PDB id

6SPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from an aminoglycoside resistant clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

GGCCAGCU*AGUU*AC*GUGGUU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPF|1|A|G|1427
6SPF|1|A|G|1428
6SPF|1|A|C|1429
6SPF|1|A|C|1430
6SPF|1|A|A|1431
6SPF|1|A|G|1432
6SPF|1|A|C|1433
6SPF|1|A|U|1434
*
6SPF|1|A|A|1451
6SPF|1|A|G|1452
6SPF|1|A|U|1453
6SPF|1|A|U|1454
*
6SPF|1|A|A|1512
6SPF|1|A|C|1513
*
6SPF|1|A|G|1536
6SPF|1|A|U|1537
6SPF|1|A|G|1538
6SPF|1|A|G|1539
6SPF|1|A|U|1540
6SPF|1|A|U|1541

Current chains

Chain A

Pseudomonas aeruginosa strain PAO1 23S ribosomal RNA

Nearby chains