J4_6SPG_001

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CCUUAAG*UGAAAUCAAGUAG*UGAACAUGG*CCAAG

Length

34 nucleotides

Bulged bases

6SPG|1|A|U|270, 6SPG|1|A|U|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|C|268
6SPG|1|A|C|269
6SPG|1|A|U|270
6SPG|1|A|U|271
6SPG|1|A|A|272
6SPG|1|A|A|273
6SPG|1|A|G|274
*
6SPG|1|A|U|354
6SPG|1|A|G|355
6SPG|1|A|A|356
6SPG|1|A|A|357
6SPG|1|A|A|358
6SPG|1|A|U|359
6SPG|1|A|C|360
6SPG|1|A|A|361
6SPG|1|A|A|362
6SPG|1|A|G|363
6SPG|1|A|U|364
6SPG|1|A|A|365
6SPG|1|A|G|366
*
6SPG|1|A|U|390
6SPG|1|A|G|391
6SPG|1|A|A|392
6SPG|1|A|A|393
6SPG|1|A|C|394
6SPG|1|A|A|395
6SPG|1|A|U|396
6SPG|1|A|G|397
6SPG|1|A|G|398
*
6SPG|1|A|C|411
6SPG|1|A|C|412
6SPG|1|A|A|413
6SPG|1|A|A|414
6SPG|1|A|G|415

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L28