J4_6SPG_003

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CGACAAU*AC*GCUUG*CAG

Length

17 nucleotides

Bulged bases

6SPG|1|A|G|1258, 6SPG|1|A|A|1259, 6SPG|1|A|C|1260, 6SPG|1|A|U|1637

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SPG|1|A|C|1257
6SPG|1|A|G|1258
6SPG|1|A|A|1259
6SPG|1|A|C|1260
6SPG|1|A|A|1261
6SPG|1|A|A|1262
6SPG|1|A|U|1263
*
6SPG|1|A|A|1281
6SPG|1|A|C|1282
*
6SPG|1|A|G|1635
6SPG|1|A|C|1636
6SPG|1|A|U|1637
6SPG|1|A|U|1638
6SPG|1|A|G|1639
*
6SPG|1|A|C|1995
6SPG|1|A|A|1996
6SPG|1|A|G|1997

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22