J4_6SPG_004

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

GGUUC*GGUUAG*CU*AACCGUAC

Length

21 nucleotides

Bulged bases

6SPG|1|A|U|1328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPG_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1522

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6SPG|1|A|G|1297
6SPG|1|A|G|1298
6SPG|1|A|U|1299
6SPG|1|A|U|1300
6SPG|1|A|C|1301
*
6SPG|1|A|G|1325
6SPG|1|A|G|1326
6SPG|1|A|U|1327
6SPG|1|A|U|1328
6SPG|1|A|A|1329
6SPG|1|A|G|1330
*
6SPG|1|A|C|1391
6SPG|1|A|U|1392
*
6SPG|1|A|A|1587
6SPG|1|A|A|1588
6SPG|1|A|C|1589
6SPG|1|A|C|1590
6SPG|1|A|G|1591
6SPG|1|A|U|1592
6SPG|1|A|A|1593
6SPG|1|A|C|1594

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain T

50S ribosomal protein L23