J4_6SPG_008

3D structure

PDB id

6SPG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pseudomonas aeruginosa 70s ribosome from a clinical isolate

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

6SPG|1|A|U|1958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SPG_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1822

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6SPG|1|A|C|1820
6SPG|1|A|U|1821
6SPG|1|A|G|1822
*
6SPG|1|A|C|1892
6SPG|1|A|G|1893
*
6SPG|1|A|C|1911
6SPG|1|A|C|1912
6SPG|1|A|U|1913
6SPG|1|A|A|1914
6SPG|1|A|A|1915
6SPG|1|A|G|1916
6SPG|1|A|G|1917
6SPG|1|A|U|1918
6SPG|1|A|A|1919
6SPG|1|A|G|1920
*
6SPG|1|A|C|1954
6SPG|1|A|G|1955
6SPG|1|A|A|1956
6SPG|1|A|A|1957
6SPG|1|A|U|1958
6SPG|1|A|G|1959

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA