J4_6SV4_005
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAUUAAAUC*GCC*GUAAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 6SV4|1|2c|A|359
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SV4_005 not in the Motif Atlas
- Homologous match to J4_8C3A_021
- Geometric discrepancy: 0.3993
- The information below is about J4_8C3A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78231.1
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
6SV4|1|2c|C|99
6SV4|1|2c|A|100
6SV4|1|2c|U|101
6SV4|1|2c|U|102
6SV4|1|2c|A|103
6SV4|1|2c|A|104
6SV4|1|2c|A|105
6SV4|1|2c|U|106
6SV4|1|2c|C|107
*
6SV4|1|2c|G|307
6SV4|1|2c|C|308
6SV4|1|2c|C|309
*
6SV4|1|2c|G|357
6SV4|1|2c|U|358
6SV4|1|2c|A|359
6SV4|1|2c|A|360
6SV4|1|2c|C|361
*
6SV4|1|2c|G|383
6SV4|1|2c|G|384
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Sc
- 40S ribosomal protein S4-A
- Chain Vc
- 40S ribosomal protein S8-A
- Chain Wc
- 40S ribosomal protein S9-A
- Chain Xc
- 40S ribosomal protein S11-A
- Chain cc
- 40S ribosomal protein S23-A
Coloring options: