J4_6SV4_006
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGUUAAAAAG*CGAAAG*CCAUAAACUAUG*UUCUG
- Length
- 34 nucleotides
- Bulged bases
- 6SV4|1|2c|A|619, 6SV4|1|2c|A|623, 6SV4|1|2c|A|1026, 6SV4|1|2c|U|1029
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|2c|C|614
6SV4|1|2c|A|615
6SV4|1|2c|G|616
6SV4|1|2c|U|617
6SV4|1|2c|U|618
6SV4|1|2c|A|619
6SV4|1|2c|A|620
6SV4|1|2c|A|621
6SV4|1|2c|A|622
6SV4|1|2c|A|623
6SV4|1|2c|G|624
*
6SV4|1|2c|C|975
6SV4|1|2c|G|976
6SV4|1|2c|A|977
6SV4|1|2c|A|978
6SV4|1|2c|A|979
6SV4|1|2c|G|980
*
6SV4|1|2c|C|1021
6SV4|1|2c|C|1022
6SV4|1|2c|A|1023
6SV4|1|2c|U|1024
6SV4|1|2c|A|1025
6SV4|1|2c|A|1026
6SV4|1|2c|A|1027
6SV4|1|2c|C|1028
6SV4|1|2c|U|1029
6SV4|1|2c|A|1030
6SV4|1|2c|U|1031
6SV4|1|2c|G|1032
*
6SV4|1|2c|U|1103
6SV4|1|2c|U|1104
6SV4|1|2c|C|1105
6SV4|1|2c|U|1106
6SV4|1|2c|G|1107
Current chains
- Chain 2c
- 18S rRNA
Nearby chains
- Chain Xc
- 40S ribosomal protein S11-A
- Chain Yc
- 40S ribosomal protein S13
- Chain ZQ
- Large subunit ribosomal RNA; LSU rRNA
- Chain Zc
- 40S ribosomal protein S14-A
- Chain bc
- 40S ribosomal protein S22-A
- Chain cc
- 40S ribosomal protein S23-A
- Chain ec
- 40S ribosomal protein S26-A
- Chain zS
- 60S ribosomal protein L41-B
- Chain zT
- 60S ribosomal protein L43-A
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