J4_6SV4_011
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UC*GGUUAG*CC*GGUCGUA
- Length
- 17 nucleotides
- Bulged bases
- 6SV4|1|BQ|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|BQ|U|1495
6SV4|1|BQ|C|1496
*
6SV4|1|BQ|G|1520
6SV4|1|BQ|G|1521
6SV4|1|BQ|U|1522
6SV4|1|BQ|U|1523
6SV4|1|BQ|A|1524
6SV4|1|BQ|G|1525
*
6SV4|1|BQ|C|1614
6SV4|1|BQ|C|1615
*
6SV4|1|BQ|G|1829
6SV4|1|BQ|G|1830
6SV4|1|BQ|U|1831
6SV4|1|BQ|C|1832
6SV4|1|BQ|G|1833
6SV4|1|BQ|U|1834
6SV4|1|BQ|A|1835
Current chains
- Chain BQ
- 25S rRNA
Nearby chains
- Chain AH
- 60S ribosomal protein L25
- Chain AI
- 60S ribosomal protein L38
- Chain AL
- 60S ribosomal protein L39
- Chain BF
- 60S ribosomal protein L19-A
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
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