3D structure

PDB id
6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
The cryo-EM structure of SDD1-stalled collided trisome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GGUUC*GGUUAG*CC*GGUCGUAC
Length
21 nucleotides
Bulged bases
6SV4|1|ZQ|U|1523
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6SV4|1|ZQ|G|1492
6SV4|1|ZQ|G|1493
6SV4|1|ZQ|U|1494
6SV4|1|ZQ|U|1495
6SV4|1|ZQ|C|1496
*
6SV4|1|ZQ|G|1520
6SV4|1|ZQ|G|1521
6SV4|1|ZQ|U|1522
6SV4|1|ZQ|U|1523
6SV4|1|ZQ|A|1524
6SV4|1|ZQ|G|1525
*
6SV4|1|ZQ|C|1614
6SV4|1|ZQ|C|1615
*
6SV4|1|ZQ|G|1829
6SV4|1|ZQ|G|1830
6SV4|1|ZQ|U|1831
6SV4|1|ZQ|C|1832
6SV4|1|ZQ|G|1833
6SV4|1|ZQ|U|1834
6SV4|1|ZQ|A|1835
6SV4|1|ZQ|C|1836

Current chains

Chain ZQ
25S rRNA

Nearby chains

Chain ZF
60S ribosomal protein L19-A
Chain ZN
60S ribosomal protein L34-A
Chain ZS
5.8S ribosomal RNA; 5.8S rRNA
Chain zF
60S ribosomal protein L37-A
Chain zH
60S ribosomal protein L25
Chain zI
60S ribosomal protein L38
Chain zL
60S ribosomal protein L39

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.6127 s