J4_6SV4_036

3D structure

PDB id

6SV4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of SDD1-stalled collided trisome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6SV4|1|ZQ|U|2314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SV4_036 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.2231

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

6SV4|1|ZQ|C|2192
6SV4|1|ZQ|U|2193
6SV4|1|ZQ|G|2194
*
6SV4|1|ZQ|C|2248
6SV4|1|ZQ|G|2249
*
6SV4|1|ZQ|C|2267
6SV4|1|ZQ|U|2268
6SV4|1|ZQ|U|2269
6SV4|1|ZQ|A|2270
6SV4|1|ZQ|A|2271
6SV4|1|ZQ|G|2272
6SV4|1|ZQ|G|2273
6SV4|1|ZQ|U|2274
6SV4|1|ZQ|A|2275
6SV4|1|ZQ|G|2276
*
6SV4|1|ZQ|U|2310
6SV4|1|ZQ|G|2311
6SV4|1|ZQ|A|2312
6SV4|1|ZQ|A|2313
6SV4|1|ZQ|U|2314
6SV4|1|ZQ|G|2315

Current chains

Chain ZQ

25S rRNA

Nearby chains

Chain 2c

Small subunit ribosomal RNA; SSU rRNA

Chain zS

60S ribosomal protein L41-B

Chain zW

60S ribosomal protein L2-A