J4_6SV4_043
3D structure
- PDB id
- 6SV4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The cryo-EM structure of SDD1-stalled collided trisome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUAG*CAGG*CCGUGUCC*GU
- Length
- 18 nucleotides
- Bulged bases
- 6SV4|1|nb|U|8, 6SV4|1|nb|U|47, 6SV4|1|nb|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SV4_043 not in the Motif Atlas
- Homologous match to J4_4RDX_001
- Geometric discrepancy: 0.305
- The information below is about J4_4RDX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6SV4|1|nb|A|7
6SV4|1|nb|U|8
6SV4|1|nb|A|9
6SV4|1|nb|G|10
*
6SV4|1|nb|C|25
6SV4|1|nb|A|26
6SV4|1|nb|G|27
6SV4|1|nb|G|28
*
6SV4|1|nb|C|42
6SV4|1|nb|C|43
6SV4|1|nb|G|44
6SV4|1|nb|U|45
6SV4|1|nb|G|46
6SV4|1|nb|U|47
6SV4|1|nb|C|48
6SV4|1|nb|C|49
*
6SV4|1|nb|G|65
6SV4|1|nb|U|66
Current chains
- Chain nb
- tRNA (A/P)
Nearby chains
- Chain 2b
- Small subunit ribosomal RNA; SSU rRNA
- Chain Eb
- 40S ribosomal protein S15
- Chain YD
- 60S ribosomal protein L10
- Chain YQ
- Large subunit ribosomal RNA; LSU rRNA
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