J4_6SWA_007

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SWA_007 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.1416

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWA|1|q|G|3605
6SWA|1|q|A|3606
6SWA|1|q|C|3607
6SWA|1|q|U|3608
6SWA|1|q|G|3609
*
6SWA|1|q|C|3621
6SWA|1|q|A|3622
6SWA|1|q|A|3623
6SWA|1|q|A|3624
6SWA|1|q|G|3625
*
6SWA|1|q|U|3661
6SWA|1|q|G|3662
6SWA|1|q|A|3663
6SWA|1|q|U|3664
6SWA|1|q|U|3665
*
6SWA|1|q|A|3792
6SWA|1|q|U|3793
6SWA|1|q|G|3794
6SWA|1|q|A|3795
6SWA|1|q|A|3796
6SWA|1|q|C|3797

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain l

60S ribosomal protein L41

Chain n

60S ribosomal protein L37a