J4_6SWA_012

3D structure

PDB id

6SWA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6SWA|1|q|U|3789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6SWA_012 not in the Motif Atlas

Homologous match to J4_8CRE_007

Geometric discrepancy: 0.2259

The information below is about J4_8CRE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_63658.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tSW-F-cSH-F-F

Number of instances in this motif group

1

Unit IDs

6SWA|1|q|C|3667
6SWA|1|q|U|3668
6SWA|1|q|G|3669
*
6SWA|1|q|C|3723
6SWA|1|q|G|3724
*
6SWA|1|q|C|3742
6SWA|1|q|U|3743
6SWA|1|q|U|3744
6SWA|1|q|A|3745
6SWA|1|q|A|3746
6SWA|1|q|G|3747
6SWA|1|q|G|3748
6SWA|1|q|U|3749
6SWA|1|q|A|3750
6SWA|1|q|G|3751
*
6SWA|1|q|U|3785
6SWA|1|q|G|3786
6SWA|1|q|A|3787
6SWA|1|q|A|3788
6SWA|1|q|U|3789
6SWA|1|q|G|3790

Current chains

Chain q

28S ribosomal RNA (3612-MER)

Nearby chains

Chain A

60S ribosomal protein L8

Chain l

60S ribosomal protein L41