J4_6SWA_013
3D structure
- PDB id
- 6SWA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mus musculus 80S ribosome bound to the peptide tunnel exit chaperone EBP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 6SWA|1|q|A|4196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SWA_013 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.2001
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6SWA|1|q|C|4193
6SWA|1|q|U|4194
6SWA|1|q|A|4195
6SWA|1|q|A|4196
6SWA|1|q|G|4197
*
6SWA|1|q|U|4251
6SWA|1|q|U|4252
6SWA|1|q|G|4253
6SWA|1|q|A|4254
6SWA|1|q|U|4255
*
6SWA|1|q|A|4279
6SWA|1|q|C|4280
6SWA|1|q|C|4281
*
6SWA|1|q|G|4290
6SWA|1|q|G|4291
6SWA|1|q|G|4292
Current chains
- Chain q
- 28S ribosomal RNA (3612-MER)
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain R
- 60S ribosomal protein L21
- Chain Z
- 60S ribosomal protein L29
- Chain m
- MCG115063, isoform CRA_a
Coloring options: