J4_6SWC_002

3D structure

PDB id

6SWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAG*CAUAG*CGAAAGG*CGC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6SWC|1|2|G|139
6SWC|1|2|A|140
6SWC|1|2|G|141
*
6SWC|1|2|C|175
6SWC|1|2|A|176
6SWC|1|2|U|177
6SWC|1|2|A|178
6SWC|1|2|G|179
*
6SWC|1|2|C|207
6SWC|1|2|G|208
6SWC|1|2|A|209
6SWC|1|2|A|210
6SWC|1|2|A|211
6SWC|1|2|G|212
6SWC|1|2|G|213
*
6SWC|1|2|C|228
6SWC|1|2|G|229
6SWC|1|2|C|230

Current chains

Chain 2

16S ribosomal rRNA

Nearby chains

Chain E

30S ribosomal protein S4e

Chain J

30S ribosomal protein S8e