J4_6SWC_004
3D structure
- PDB id
- 6SWC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- IC2B model of cryo-EM structure of a full archaeal ribosomal translation initiation complex devoid of aIF1 in P. abyssi
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- G(4SU)GG*CGU*AAGAUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 6SWC|1|4|4SU|8, 6SWC|1|4|U|47, 6SWC|1|4|C|48
- QA status
- Modified nucleotides: 4SU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_6SWC_004 not in the Motif Atlas
- Homologous match to J4_7VNV_001
- Geometric discrepancy: 0.3266
- The information below is about J4_7VNV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
6SWC|1|4|G|7
6SWC|1|4|4SU|8
6SWC|1|4|G|9
6SWC|1|4|G|10
*
6SWC|1|4|C|25
6SWC|1|4|G|26
6SWC|1|4|U|27
*
6SWC|1|4|A|43
6SWC|1|4|A|44
6SWC|1|4|G|45
6SWC|1|4|A|46
6SWC|1|4|U|47
6SWC|1|4|C|48
6SWC|1|4|G|49
*
6SWC|1|4|C|65
6SWC|1|4|C|66
Current chains
- Chain 4
- initiator Met-tRNA fMet from E. coli (A1U72 variant)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain O
- 30S ribosomal protein S13
Coloring options: