3D structure

PDB id
6SZS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilis
Experimental method
ELECTRON MICROSCOPY
Resolution
3.06 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
6SZS|1|A|G|1271, 6SZS|1|A|A|1272, 6SZS|1|A|U|1273, 6SZS|1|A|A|1275, 6SZS|1|A|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_6SZS_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.087
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

6SZS|1|A|C|1270
6SZS|1|A|G|1271
6SZS|1|A|A|1272
6SZS|1|A|U|1273
6SZS|1|A|A|1274
6SZS|1|A|A|1275
6SZS|1|A|A|1276
*
6SZS|1|A|U|1294
6SZS|1|A|C|1295
*
6SZS|1|A|G|1645
6SZS|1|A|C|1646
6SZS|1|A|U|1647
6SZS|1|A|U|1648
*
6SZS|1|A|A|2009
6SZS|1|A|G|2010

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22

Coloring options:


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