J4_6T4Q_005

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T4Q_005 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1069

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|C|185
6T4Q|1|C1|U|186
6T4Q|1|C1|A|187
6T4Q|1|C1|U|188
6T4Q|1|C1|G|189
*
6T4Q|1|C1|C|205
6T4Q|1|C1|G|206
6T4Q|1|C1|U|207
6T4Q|1|C1|C|208
*
6T4Q|1|C1|G|212
6T4Q|1|C1|A|213
6T4Q|1|C1|G|214
*
6T4Q|1|C1|C|226
6T4Q|1|C1|G|227
6T4Q|1|C1|U|228
6T4Q|1|C1|G|229
6T4Q|1|C1|U|230
6T4Q|1|C1|G|231

Current chains

Chain C1

25S rRNA

Nearby chains

Chain C3

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

60S ribosomal protein L4-A

Chain LY

60S ribosomal protein L26-A