J4_6T4Q_012

3D structure

PDB id

6T4Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CCG inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T4Q_012 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.074

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_65356.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

6T4Q|1|C1|U|3010
6T4Q|1|C1|A|3011
6T4Q|1|C1|A|3012
*
6T4Q|1|C1|U|3042
6T4Q|1|C1|C|3043
*
6T4Q|1|C1|G|3098
6T4Q|1|C1|C|3099
6T4Q|1|C1|U|3100
*
6T4Q|1|C1|A|3134
6T4Q|1|C1|U|3135
6T4Q|1|C1|G|3136

Current chains

Chain C1

25S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A

Chain LV

60S ribosomal protein L23-A