J4_6T59_001

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUAG*CGU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

6T59|1|23|U|8, 6T59|1|23|U|47, 6T59|1|23|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T59_001 not in the Motif Atlas

Homologous match to J4_7EQJ_002

Geometric discrepancy: 0.2012

The information below is about J4_7EQJ_002

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

6T59|1|23|G|7
6T59|1|23|U|8
6T59|1|23|A|9
6T59|1|23|G|10
*
6T59|1|23|C|25
6T59|1|23|G|26
6T59|1|23|U|27
*
6T59|1|23|A|43
6T59|1|23|A|44
6T59|1|23|G|45
6T59|1|23|G|46
6T59|1|23|U|47
6T59|1|23|C|48
6T59|1|23|C|49
*
6T59|1|23|G|65
6T59|1|23|C|66

Current chains

Chain 23

P-site tRNA

Nearby chains

Chain 54

Large subunit ribosomal RNA; LSU rRNA

Chain I3

60S ribosomal protein L10