J4_6T59_008

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

6T59|1|54|U|3818

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T59_008 not in the Motif Atlas

Homologous match to J4_8C3A_007

Geometric discrepancy: 0.1347

The information below is about J4_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|3696
6T59|1|54|U|3697
6T59|1|54|G|3698
*
6T59|1|54|C|3752
6T59|1|54|G|3753
*
6T59|1|54|C|3771
6T59|1|54|U|3772
6T59|1|54|U|3773
6T59|1|54|A|3774
6T59|1|54|A|3775
6T59|1|54|G|3776
6T59|1|54|G|3777
6T59|1|54|U|3778
6T59|1|54|A|3779
6T59|1|54|G|3780
*
6T59|1|54|U|3814
6T59|1|54|G|3815
6T59|1|54|A|3816
6T59|1|54|A|3817
6T59|1|54|U|3818
6T59|1|54|G|3819

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain 23

Transfer RNA; tRNA

Chain A3

Ribosomal protein L8

Chain n3

60s ribosomal protein l41