J4_6T59_010

3D structure

PDB id

6T59 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of rabbit 80S ribosome translating beta-tubulin in complex with tetratricopeptide protein 5 and nascent chain-associated complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CUAAG*UUGAU*ACC*GGG

Length

16 nucleotides

Bulged bases

6T59|1|54|A|4234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T59_010 not in the Motif Atlas

Homologous match to J4_8C3A_008

Geometric discrepancy: 0.1862

The information below is about J4_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6T59|1|54|C|4231
6T59|1|54|U|4232
6T59|1|54|A|4233
6T59|1|54|A|4234
6T59|1|54|G|4235
*
6T59|1|54|U|4289
6T59|1|54|U|4290
6T59|1|54|G|4291
6T59|1|54|A|4292
6T59|1|54|U|4293
*
6T59|1|54|A|4317
6T59|1|54|C|4318
6T59|1|54|C|4319
*
6T59|1|54|G|4328
6T59|1|54|G|4329
6T59|1|54|G|4330

Current chains

Chain 54

28S ribosomal RNA

Nearby chains

Chain D3

60S ribosomal protein L5

Chain T3

eL21

Chain b3

eL29

Chain o3

eL42