J4_6T7I_012

3D structure

PDB id

6T7I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of yeast 80S ribosome stalled on the CGA-CGA inhibitory codon combination.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_6T7I_012 not in the Motif Atlas

Homologous match to J4_8P9A_020

Geometric discrepancy: 0.1134

The information below is about J4_8P9A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.1

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6T7I|1|C1|U|3010
6T7I|1|C1|A|3011
6T7I|1|C1|A|3012
*
6T7I|1|C1|U|3042
6T7I|1|C1|C|3043
*
6T7I|1|C1|G|3098
6T7I|1|C1|C|3099
6T7I|1|C1|U|3100
*
6T7I|1|C1|A|3134
6T7I|1|C1|U|3135
6T7I|1|C1|G|3136

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L16-A

Chain LV

60S ribosomal protein L23-A